Cell Biology & Neuroscience

Faculty and Research Interests

Dimitri Pestov, PhD

Dimitri Pestov, PhD

Associate Professor
Science Center 204A


University of Illinois,
PhD, 1997.

Research Interests

figure 1--Structure of the DNA zipper

Figure 1. GTP-binding protein Nog1 is detected in the nucleolus of mouse cells by indirect immunofluorescence staining. Nog1 is one of the factors required for the assembly of 60S ribosomal subunits in eukaryotic cells.

Ribosomes are biological nanomachines that make polypeptide chains based on instructions encoded in messenger RNA. Cells require a large number of ribosomes to make proteins, especially during periods of active growth and proliferation. In eukaryotic cells, the elaborate ribosome structure is built through a complex assembly process that requires the assistance of more than 150 protein factors, in addition to dozens or even hundreds of small RNAs. Many molecular details of ribosome biogenesis and the functions of proteins involved in this process are still poorly understood.

One of our research interests is how cells maintain high efficiency and accuracy of ribosome synthesis. Like any other complex assembly process, biosynthesis of ribosomes generates a certain fraction of defective products and kinetically trapped intermediates. How do cells distinguish between ribosomes that are built correctly and those that are not? To learn more about the mechanisms underlying quality control in this system, we are studying the roles of several mammalian nucleolar proteins involved in 60S subunit formation. Using biochemical and molecular approaches, we are also investigating how misassembled preribosomal particles are targeted for degradation.

Figure 2. A variety of adverse metabolic or genetic factors can cause perturbations in ribosome biogenesis. The resulting nucleolar stress activates signaling pathways that may lead to a temporary block of the cell cycle in some cell types, and apoptosis in others.

Another important question that we address in our work is how ribosome biogenesis is interfaced with stress responses and cell cycle control in mammalian cells. In our experiments, we find that errors in ribosome biogenesis occur more often when cells are exposed to various types of metabolic stress. In our previous studies, we have also discovered that perturbations in ribosome assembly have a strong influence on the cell cycle machinery, mediated in part through the tumor suppressor protein p53. By elucidating the mechanisms of cellular surveillance of ribosome synthesis, we hope to better understand the links between biosynthetic processes taking place in the nucleolus and proliferation control in normal and cancer cells.

Selected Publications

(Updated March 2018)

  1. Shedlovskiy D, Shcherbik N, Pestov DG. One-step hot formamide extraction of RNA from Saccharomyces cerevisiae. RNA Biol, 14(12): 1722-6, December 2017.
  2. Shedlovskiy D, Zinskie JA, Gardner E, Pestov DG, Shcherbik N. Endonucleolytic cleavage in the expansion segment 7 of 25S rRNA is an early marker of low-level oxidative stress in yeast. J Biol Chem, 292(45): 18469-85, November 2017.
  3. Sapio RT, Nezdyur AN, Krevetski M, Anikin L, Manna VJ, Minkovsky N, Pestov DG. Inhibition of post-transcriptional steps in ribosome biogenesis confers cytoprotection against chemotherapeutic agents in a p53-dependent manner. Sci Rep, 7(1): 9041, August 2017.
  4. Wang M, Pestov DG. Quantitative Northern Blot Analysis of Mammalian rRNA Processing. Methods Mol Biol, 1455: 147-57, August 2016.
  5. Shcherbik N, Chernova TA, Chernoff YO, Pestov DG. Distinct types of translation termination generate substrates for ribosome-associated quality control. Nucleic Acids Res, 44(14): 6840-52, August 2016.
  6. Wang M, Parshin AV, Shcherbik N, Pestov DG. Reduced expression of the mouse ribosomal protein Rpl17 alters the diversity of mature ribosomes by enhancing production of shortened 5.8S rRNA. RNA, 21(7): 1240-8, July 2015.
  7. Wang M, Anikin L, Pestov DG. Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis. Nucleic Acids Res, 42(17): 11180-91, September 2014.
  8. Mansour FH, Pestov DG. Separation of long RNA by agarose-formaldehyde gel electrophoresis. Anal Biochem, 441(1): 18-20, October 2013.
  9. Pestov DG, Shcherbik N. Rapid cytoplasmic turnover of yeast ribosomes in response to rapamycin inhibition of TOR. Mol Cell Biol, 32(11): 2135-44, June 2012.
  10. Shcherbik N, Pestov DG. The ubiquitin ligase Rsp5 is required for ribosome stability in Saccharomyces cerevisiae. RNA, 17(8): 1422-8, August 2011.

    2. Wang M, Pestov DG. 5'-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay. Nucleic Acids Res, 39(5): 1811-22, March 2011.

    3. Shcherbik N, Pestov DG. Ubiquitin and ubiquitin-like proteins in the nucleolus: multitasking tools for a ribosome factory. Genes Cancer, 1(7): 681-689, July 2010.

    4. Srivastava L, Lapik YR, Wang M, Pestov DG. Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA. Mol Cell Biol, 30(12): 2947-56, June 2010.

    5. Shcherbik N, Wang M, Lapik YR, Srivastava L, Pestov DG. Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells. EMBO Rep, 11(2): 106-11, February 2010.

    6. Kent T, Lapik YR, Pestov DG. The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA, 15(1): 14-20, January 2009.

    7. Pestov DG, Lapik YR, Lau LF. Assays for ribosomal RNA processing and ribosome assembly. Curr Protoc Cell Biol, Chapter 22: Unit 22.11, June 2008.

    8. Lapik YR, Misra JM, Lau LF, Pestov DG. Restricting conformational flexibility of the switch II region creates a dominant-inhibitory phenotype in Obg GTPase Nog1. Mol Cell Biol, 27(21): 7735-44, November 2007.

    9. Lapik YR, Fernandes CJ, Lau LF, Pestov DG. Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis. Mol Cell, 15(1): 17-29, July 2004.

    10. Pestov DG, Strezoska Z, Lau LF. Evidence of p53-dependent cross-talk between ribosome biogenesis and the cell cycle: effects of nucleolar protein Bop1 on G(1)/S transition. Mol Cell Biol, 21(13): 4246-55, July 2001.

    Complete publication list:

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